These Healthy Banana Pumpkin Muffins are filled with warm pumpkin pie spice and are lightly sweetened with banana and maple syrup. They’re gluten-free and dairy-free and make a perfect healthy afterschool snack for your kids in the Fall!

Overhead view of a plate of Gluten-Free Pumpkin Banana Muffins. One muffin has a bite out of it.

With a delicious combination of pumpkin puree, mashed bananas, and pumpkin spice these easy pumpkin banana muffins are sure to delight the whole family this Fall season!

We’re a muffin-obsessed family. My kids also really love these Apple Cinnamon Muffins and Blueberry Blender Muffins!

Healthy Pumpkin Banana Muffins

I love using overripe bananas as a natural sweetener in muffins to create a healthier snack for my kids (ages 3 and 6), like these Banana Spinach Muffins.

In addition to the banana, I added a little bit of maple syrup to these muffins to balance out the pumpkin puree flavor. However, if you want the recipe to contain no added sugar, you could try replacing the maple syrup with an extra banana! This would be a great option if you serving these as a baby-led weaning muffin or if serving them to toddlers.

A stack of three pumpkin banana muffins on a plate, the bottom one is in a parchment paper liner.

What You’ll Love About This Recipe

  • Easy – Easily whip these muffins up for a fun kid snack! Add some nut butter to help balance blood sugar. 
  • Low Sugar – Sweetened with banana and ⅓ cup of maple syrup, you’ll love that these are a healthier muffin for your kids!
  • Fall Flavors – These muffins have all the Fall flavors…which, personally, just makes me smile and feel happy and cozy!

Recipe Ingredients

You’ll need the following ingredients to make these Healthy Banana and Pumpkin Muffins:

Ingredients for pumpkin muffins.

Ingredient Notes

  • Gluten-Free Flour: I used a 1:1 Gluten-Free Baking Flour for this recipe.
  • Pumpkin Puree: Use 100% pure pumpkin. Pumpkin Pie Filling comes with sugar and spices added in. You want the pumpkin puree in its pure form.

Additions & Substitutions

Additions:

  • Chocolate Chips or white chocolate chips
  • Chopped walnuts or pecans
  • Raisins

Substitutions:

  • Gluten-Free Flour: You may swap out the gluten-free flour for regular all-purpose flour at a 1:1 ratio.
  • Olive Oil: I use extra virgin olive oil in this recipe. You can substitute this with 1/2 cup of melted coconut oil (this will require a full cup of solid-form coconut oil – when you microwave the coconut oil, it condenses to 1/2 cup melted oil). You may also substitute the oil for a more neutral vegetable oil.
  • Maple Syrup: You can swap the maple syrup for an additional overripe banana, if you don’t want the recipe to have any added sugar. This would be a great option for baby-led weaning or for toddlers!
  • Eggs: I have not tried making these pumpkin muffins vegan, however, you could try replacing the eggs with flax eggs or chia eggs! To do this, combine 2 tablespoons of chia seeds or flaxseed meal with 5 tablespoons water and let it sit for a few minutes until it coagulates. Add it to the recipe as you would eggs.

How to Make Banana Pumpkin Muffins: STEP-BY-STEP

For the full recipe with the exact ingredients, scroll down to the printable recipe card below!

Dry ingredients in a bowl.

Step 1: In a large bowl mix the gluten-free flour, baking powder, baking soda, pumpkin pie spice, and salt. Set aside.

Wet ingredients mixed together in a bowl.

Step 2: In a medium bowl, add the banana and mash. Next, add the eggs, maple syrup, olive oil, vanilla, and mix well.

Dry ingredients and wet ingredients mixed together in a bowl.

Step 3: Add the wet ingredients to the dry ingredients and stir to combine.

Muffin batter in a muffin tin before it goes into the oven.

Step 4: Scoop the batter into a muffin pan lined with parchment paper liners so they are about ¾ full. (Optional) Top with sprinkles of toasted pecan pieces. Bake in the oven for 20 minutes at 350 degrees Fahrenheit or until a toothpick comes out clean when inserted into the middle of a muffin.

Storage & Reheating

  • Fridge: Store leftovers in an airtight container in the fridge for 4-5 days. I like warming my muffins up for about 15 seconds in the microwave before eating them when stored in the fridge, but my kids don’t mind them cold one bit!
  • Freezer: Allow the muffins to cool completely, remove the liners, and then transfer them to a freezer-safe container or freezer bag and freeze.
  • Reheating: When you’re ready to eat them, you can heat them in the microwave for about 30 seconds or let them thaw on the counter to eat at room temperature. Store in the freezer for up to 3 months.
A close up image of a pumpkin muffin with a bite out of it. It's on a plate and sitting in a muffin liner, with more muffins behind it.

Frequently Asked Questions

Can I use almond flour?

I have not personally tried making these muffins with almond flour, so I can’t say for sure how they’d turn out. I would not recommend this, as the consistency will most likely be quite different. If you try it out with almond flour, let me know how they turn out in the comments!

Can I make these pumpkin muffins vegan?

I have not tried making these vegan, however, you could try replacing the eggs with flax eggs or chia eggs! To do this, combine 2 tablespoons chia seeds/flaxseed meal with 5 tablespoons water and let it sit for a few minutes until it coagulates. Add it to the recipe as you would eggs.

Can I omit the maple syrup?

Yes! You can replace the maple syrup with an additional overripe banana if you want this recipe to have no added sugar. This would be a great option if you were serving these muffins as a baby-led weaning recipe or to toddlers!

Can I use regular flour instead of gluten-free flour?

Yes! Simply replace the gluten-free flour with regular all-purpose flour at a 1:1 ratio. Keep in mind that the muffins won’t be gluten-free anymore.

Can I use pumpkin pie filling to make these muffins?

No, use pumpkin puree for the recipe. Pumpkin pie filling comes with sugar and spices already mixed in.

What gluten-free flour blend do you use?

I personally love Bob’s Red Mill Gluten-Free 1:1 Flour Blend. I’ve also tried it with the gluten-free flour blend from Trader Joe’s!

Overhead view of a plate of muffins, two are turned on their sides. Two small bowls of gluten-free flour and pumpkin puree sit next to the plate.

I hope you love these Healthy Banana Pumpkin Muffins! If you make them, be sure to leave a rating below so I know how you liked them! Enjoy!

Overhead view of a plate of Gluten-Free Pumpkin Banana Muffins. One muffin has a bite out of it.
5 stars (1 rating)

Healthy Banana Pumpkin Muffins (Gluten-Free)

Yield: 12 muffins
These Healthy Banana Pumpkin Muffins are the perfect Fall snack for kids! They are low in sugar, gluten-free, dairy-free, and easy to make!
Prep Time: 10 minutes
Cook Time: 20 minutes
Total Time: 30 minutes

Ingredients
 

  • 1 ¾ cup gluten-free flour
  • 1 teaspoon baking powder
  • ½ teaspoon baking soda
  • 1 ½ teaspoons pumpkin pie spice
  • ½ teaspoon salt
  • 1 banana , mashed
  • 1 cup pumpkin puree
  • 2 eggs
  • cup maple syrup
  • ½ cup olive oil
  • 2 teaspoons vanilla extract

Instructions
 

  • Preheat oven to 350 degrees Fahrenheit. Line a muffin pan with non-stick parchment paper liners and set aside.
  • In a large mixing bowl mix the flour, baking powder, baking soda, pumpkin pie spice, and salt. Set aside.
  • In a medium bowl, add the banana and mash.
  • Next, add the pumpkin puree, eggs, maple syrup, olive oil, vanilla, and mix well.
  • Add the wet ingredients to the dry ingredients and stir to combine.
  • Scoop the batter into the muffin liners so they are about ¾ full. (Optional) Top with sprinkles of toasted pecan pieces.
  • Bake in the oven for 20 minutes or until a toothpick comes out clean when inserted into the middle of a muffin.

Notes

How to store: Store these muffins in an airtight container in the fridge for up to 4-5 days. I like warming my muffins up for about 15 seconds in the microwave before eating them from the fridge, but my kids don’t mind them cold one bit!
How to freeze: Allow the muffins to cool completely, remove the liners, and then transfer them to a freezer-safe container or freezer bag and freeze. When you’re ready to eat them, you can heat them in the microwave for about 30 seconds or let them thaw on the counter to eat at room temperature. Store in the freezer for up to 3 months.
Course: Snack
Cuisine: American
Calories: 191kcal, Carbohydrates: 23g, Protein: 3g, Fat: 10g, Saturated Fat: 2g, Polyunsaturated Fat: 1g, Monounsaturated Fat: 7g, Trans Fat: 0.003g, Cholesterol: 27mg, Sodium: 191mg, Potassium: 110mg, Fiber: 3g, Sugar: 8g, Vitamin A: 3224IU, Vitamin C: 2mg, Calcium: 53mg, Iron: 1mg
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